Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 143 curated entries in PaperBLAST's database that match '3.5.3.1'.

These curated entries have 101 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_00211: Porphyromonas-type peptidyl-arginine deiminase
is similar to:
PaperBLAST

Q9ABL6: agmatine deiminase (EC 3.5.3.12) from Caulobacter vibrioides

100% id,
91% cov

O86509: agmatine deiminase (EC 3.5.3.12) from Streptomyces coelicolor

36% id,
100% cov

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

36% id,
95% cov

More...

CCNA_01012: N-formimino-L-glutamate deiminase
is similar to:
PaperBLAST

SMc00673: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Sinorhizobium meliloti

52% id,
98% cov

Q9HU77: formimidoylglutamate deiminase (EC 3.5.3.13) from Pseudomonas aeruginosa

51% id,
100% cov

AO356_09645: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens

50% id,
100% cov

More...

CCNA_00212: N-carbamoylputrescine amidase
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

45% id,
99% cov

CCNA_00871: carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

27% id,
94% cov

CCNA_02699: guanine deaminase
is similar to:
PaperBLAST

Q9HU77: formimidoylglutamate deiminase (EC 3.5.3.13) from Pseudomonas aeruginosa

26% id,
89% cov

AO356_09645: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens

25% id,
87% cov

hutF / Q4KJP1: formiminoglutamate deiminase subunit (EC 3.5.3.13) from Pseudomonas fluorescens

25% id,
85% cov

More...

CCNA_03058: carbon-nitrogen hydrolase
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

27% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

227545-228687 (frame +1) on NC_011916
is similar to:
PaperBLAST

Q9ABL6: agmatine deiminase (EC 3.5.3.12) from Caulobacter vibrioides
Also see hits to annotated proteins above

100% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory