Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 19 curated entries in PaperBLAST's database that match '3.5.3.12' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_00211: Porphyromonas-type peptidyl-arginine deiminase
is similar to:
PaperBLAST

Q9ABL6: agmatine deiminase (EC 3.5.3.12) from Caulobacter vibrioides

100% id,
91% cov

O86509: agmatine deiminase (EC 3.5.3.12) from Streptomyces coelicolor

36% id,
100% cov

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
aguA / Q9I6J9: agmatine deiminase subunit (EC 3.5.3.12) from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

36% id,
95% cov

More...

CCNA_00212: N-carbamoylputrescine amidase
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

45% id,
99% cov

CCNA_00871: carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

27% id,
94% cov

CCNA_03058: carbon-nitrogen hydrolase
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

27% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

227545-228687 (frame +1) on NC_011916
is similar to:
PaperBLAST

Q9ABL6: agmatine deiminase (EC 3.5.3.12) from Caulobacter vibrioides
Also see hits to annotated proteins above

100% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory