Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 42 curated entries in PaperBLAST's database that match '4.1.1.17'.

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_00365: ornithine decarboxylase
is similar to:
PaperBLAST

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

32% id,
82% cov

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

30% id,
85% cov

C9W982: ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata

29% id,
88% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

381402-382775 (frame -2) on NC_011916
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca
Also see hits to annotated proteins above

28% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory