Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 15 curated entries in PaperBLAST's database that match '4.1.1.43' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_01800: pyruvate dehydrogenase E1 component beta subunit
is similar to:
PaperBLAST

ppdcβ / G1UHX5: phenylpyruvate decarboxylase β subunit (EC 4.1.1.43) from Streptomyces virginiae

39% id,
98% cov

CCNA_01799: pyruvate dehydrogenase E1 component alpha subunit
is similar to:
PaperBLAST

ppdcα / A0A222AKA3: phenylpyruvate decarboxylase α subunit (EC 4.1.1.43) from Streptomyces virginiae
A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae

29% id,
86% cov

CCNA_02185: acetolactate synthase large subunit
is similar to:
PaperBLAST

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

27% id,
60% cov

PDC1_YEAST / P06169: Pyruvate decarboxylase isozyme 1; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC1 / P06169: pyruvate decarboxylase (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

23% id,
55% cov

PDC6_YEAST / P26263: Pyruvate decarboxylase isozyme 3; Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase; 2ODC; EC 4.1.1.-; EC 4.1.1.43; EC 4.1.1.72; EC 4.1.1.74 from Saccharomyces cerevisiae
PDC6 / P26263: pyruvate decarboxylase 3 monomer (EC 4.1.1.1; EC 4.1.1.80; EC 4.1.1.43; EC 4.1.1.74; EC 4.1.1.72) from Saccharomyces cerevisiae

22% id,
55% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory