Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_01841: isocitrate lyase is similar to:	PaperBLAST
ACEA_HYPME / O50078: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Hyphomicrobium methylovorum	81% id, 100% cov
A8C781: isocitrate lyase (EC 4.1.3.1) from Azotobacter vinelandii	58% id, 100% cov
Psest_2014: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas stutzeri	59% id, 98% cov
Q9I0K4: isocitrate lyase (EC 4.1.3.1) from Pseudomonas aeruginosa	59% id, 97% cov
A8C5K8: isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea	55% id, 100% cov
Q93R40: isocitrate lyase (EC 4.1.3.1) from Colwellia maris	55% id, 96% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	28% id, 84% cov
ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli	33% id, 59% cov
BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis	32% id, 51% cov
Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis	36% id, 44% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	33% id, 47% cov
ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis	30% id, 51% cov
Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus	33% id, 46% cov
ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum	35% id, 44% cov
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	37% id, 40% cov
Pf1N1B4_4042: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens	36% id, 41% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	36% id, 39% cov
Q97YI8: isocitrate lyase (EC 4.1.3.1) from Saccharolobus solfataricus	33% id, 40% cov
Q97YI8: isocitrate lyase (EC 4.1.3.1) from Saccharolobus solfataricus	29% id, 42% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	28% id, 44% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	26% id, 42% cov
ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli	26% id, 39% cov
Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis	25% id, 38% cov
ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae	31% id, 29% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	26% id, 34% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	28% id, 30% cov
ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis	34% id, 21% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	38% id, 19% cov
ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum	37% id, 19% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae P0CT06: isocitrate lyase (EC 4.1.3.1) from Pyricularia oryzae	22% id, 31% cov
BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis	34% id, 20% cov
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans	35% id, 19% cov
Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus	32% id, 20% cov
Pf1N1B4_4042: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens	35% id, 18% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA2_MYCTO / Q8VJU4: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis	25% id, 25% cov
Q5YLB6: isocitrate lyase (EC 4.1.3.1) from Paracoccidioides brasiliensis	32% id, 16% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans acuD / PDB\|1DQU_A: isocitrate lyase; EC 4.1.3.1 from Emericella nidulans	33% id, 15% cov
Q9P8Q7: isocitrate lyase (EC 4.1.3.1) from Candida albicans	29% id, 16% cov
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	44% id, 10% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	29% id, 15% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	29% id, 15% cov
Q4HYR2: isocitrate lyase (EC 4.1.3.1) from Fusarium graminearum	30% id, 15% cov
ACEA_ARATH / P28297: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Arabidopsis thaliana icl / P28297: isocitrate lyase (EC 4.1.3.1) from Arabidopsis thaliana	30% id, 14% cov
ACEA_BRANA / P25248: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Brassica napus	35% id, 12% cov
ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa	32% id, 12% cov
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans	26% id, 16% cov
ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae	32% id, 12% cov
ACEA_ORYSJ / Q6Z6M4: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Oryza sativa	52% id, 7% cov
More...

CCNA_01843: malate synthase is similar to:	PaperBLAST
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans	52% id, 54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory