Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 8 curated entries in PaperBLAST's database that match '4.1.3.25' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_03094: citrate lyase beta subunit
is similar to:
PaperBLAST

MCLA_CHLAU / S5N020: Malyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase; (3S)-3-carboxy-3-hydroxypropanoyl-CoA glyoxylate-lyase; (3S)-citramalyl-CoA pyruvate-lyase; (S)-citramalyl-CoA lyase; Erythro-beta-methylmalyl-CoA; L-malyl-CoA lyase; EC 4.1.3.24; EC 4.1.3.25 from Chloroflexus aurantiacus
mclA / A9WC35: L-malyl CoA lyase subunit (EC 4.1.3.25; EC 4.1.3.24) from Chloroflexus aurantiacus
S5N020: malyl-CoA lyase (EC 4.1.3.24); (S)-citramalyl-CoA lyase (EC 4.1.3.25) from Chloroflexus aurantiacus

66% id,
99% cov

MCAL_CERS4 / Q3J5L6: L-malyl-CoA/beta-methylmalyl-CoA lyase; (3S)-malyl-CoA/beta-methylmalyl-CoA lyase; (S)-citramalyl-CoA lyase; EC 4.1.3.24; EC 4.1.3.25 from Cereibacter sphaeroides

37% id,
98% cov

Q9I562: (S)-citramalyl-CoA lyase (EC 4.1.3.25) from Pseudomonas aeruginosa

25% id,
98% cov

CCNA_03774: citrate lyase beta chain/citryl-CoA lyase subunit
is similar to:
PaperBLAST

Q9I562: (S)-citramalyl-CoA lyase (EC 4.1.3.25) from Pseudomonas aeruginosa

34% id,
96% cov

A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus

31% id,
94% cov

MCAL_CERS4 / Q3J5L6: L-malyl-CoA/beta-methylmalyl-CoA lyase; (3S)-malyl-CoA/beta-methylmalyl-CoA lyase; (S)-citramalyl-CoA lyase; EC 4.1.3.24; EC 4.1.3.25 from Cereibacter sphaeroides

38% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory