Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 31 curated entries in PaperBLAST's database that match '4.1.3.30'.

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_01980: PEP phosphonomutase related enzyme
is similar to:
PaperBLAST

PRPB_ECOLI / P77541: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Escherichia coli
YahQ / b0331: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli
prpB / P77541: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli

32% id,
81% cov

CCNA_01841: isocitrate lyase
is similar to:
PaperBLAST

ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis

30% id,
51% cov

P54528: Methylisocitrate lyase (EC 4.1.3.30) from Bacillus subtilis

33% id,
39% cov

Q2L8W6: Methylisocitrate lyase (EC 4.1.3.30) from Toxoplasma gondii

28% id,
45% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory