Searching in Caulobacter crescentus NA1000 (Caulo)
Found 59 curated entries in PaperBLAST's database that match '4.1.3.4'.
These curated entries have 34 distinct sequences.
Running ublast with E ≤ 0.01
Found 8 relevant proteins in Caulobacter crescentus NA1000, or try another query
| CCNA_00500: hydroxymethylglutaryl-CoA lyase is similar to: | PaperBLAST |
LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa | 41% id, 98% cov |
CCL_CHLAA / A9WGE2: (R)-citramalyl-CoA lyase; EC 4.1.3.46 from Chloroflexus aurantiacus | 41% id, 95% cov |
mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii | 40% id, 95% cov |
| CCNA_03204: alanine racemase is similar to: | PaperBLAST |
BHCC_PARDP / A1B8Z1: 3-hydroxy-D-aspartate aldolase; beta-hydroxyaspartate aldolase; EC 4.1.3.41 from Paracoccus denitrificans | 42% id, 93% cov |
BHCC_PARDE / Q8GRC8: 3-hydroxy-D-aspartate aldolase; D-3-hydroxyaspartate aldolase; D-HAA; EC 4.1.3.41 from Paracoccus denitrificans | 39% id, 93% cov |
| CCNA_03774: citrate lyase beta chain/citryl-CoA lyase subunit is similar to: | PaperBLAST |
A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus | 31% id, 94% cov |
| CCNA_00825: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase is similar to: | PaperBLAST |
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli | 29% id, 89% cov |
| CCNA_01610: 2-isopropylmalate synthase is similar to: | PaperBLAST |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis | 24% id, 87% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 27% id, 74% cov |
hsaF / Q0S815: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Rhodococcus jostii | 26% id, 53% cov |
| CCNA_02251: methylglutaconyl-CoA hydratase is similar to: | PaperBLAST |
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans | 30% id, 41% cov |
| CCNA_03293: multifunctional fatty acid oxidation complex subunit alpha FadJ is similar to: | PaperBLAST |
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans | 29% id, 41% cov |
| CCNA_00996: enoyl-CoA hydratase is similar to: | PaperBLAST |
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans | 28% id, 40% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 886223-887617 (frame -3) on NC_011916 is similar to: | PaperBLAST |
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli | 27% id, 94% cov |
Lawrence Berkeley National Laboratory