Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 95 curated entries in PaperBLAST's database that match '4.1.99.1'.

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_02109: thiamine biosynthesis protein thiC
is similar to:
PaperBLAST

THIC_CAUVC / Q9A6Q5: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Caulobacter vibrioides
thiC / Q9A6Q5: HMP-P synthase monomer (EC 4.1.99.17) from Caulobacter vibrioides
Q9A6Q5: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Caulobacter vibrioides

100% id,
100% cov

THIC_SALTY / Q9L9I7: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Salmonella typhimurium
Q9L9I7: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Salmonella enterica

66% id,
97% cov

ThiC / b3994: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Escherichia coli
thiC / P30136: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Escherichia coli

66% id,
97% cov

More...

CCNA_00683: Deoxyribodipyrimidine photo-lyase-related protein
is similar to:
PaperBLAST

Q3IXP1: (6-4)DNA photolyase (EC 4.1.99.13) from Cereibacter sphaeroides

55% id,
97% cov

PHRB_AGRFC / A9CH39: (6-4) photolyase; (6-4)DNA photolyase; DNA photolyase PhrB; Photoreactivating enzyme PhrB; EC 4.1.99.13 from Agrobacterium fabrum
A9CH39: (6-4)DNA photolyase (EC 4.1.99.13) from Agrobacterium tumefaciens

51% id,
99% cov

CCNA_00931: GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase
is similar to:
PaperBLAST

Q9KKP2: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Vibrio cholerae

53% id,
93% cov

A5U2B7: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Mycobacterium tuberculosis

51% id,
96% cov

RIBB_ECOLI / P0A7J0: 3,4-dihydroxy-2-butanone 4-phosphate synthase; DHBP synthase; DHBPS; EC 4.1.99.12 from Escherichia coli
LuxH / b3041: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
ribB / GB|AAN44559.1: 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC 4.1.99.12 from Shigella flexneri
ribB / P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli

49% id,
93% cov

More...

CCNA_01495: deoxyribodipyrimidine photolyase
is similar to:
PaperBLAST

M1V623: (6-4)DNA photolyase (EC 4.1.99.13) from Cyanidioschyzon merolae

29% id,
94% cov

Q8SXK5: (6-4)DNA photolyase (EC 4.1.99.13) from Drosophila melanogaster

31% id,
85% cov

Q0E8P0: (6-4)DNA photolyase (EC 4.1.99.13) from Drosophila melanogaster

31% id,
85% cov

More...

CCNA_01648: adenosylmethionine-8-amino-7-oxononanoate
is similar to:
PaperBLAST

P31015: tryptophanase (EC 4.1.99.1) from Symbiobacterium thermophilum

29% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory