Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 83 curated entries in PaperBLAST's database that match '4.2.1.17'.

These curated entries have 62 distinct sequences.

Running ublast with E ≤ 0.01

Found 21 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_00006: enoyl-CoA hydratase
is similar to:
PaperBLAST

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

66% id,
98% cov

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

64% id,
98% cov

BPHYT_RS17335: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Burkholderia phytofirmans

64% id,
98% cov

More...

CCNA_03293: multifunctional fatty acid oxidation complex subunit alpha FadJ
is similar to:
PaperBLAST

ECHP_MOUSE / Q9DBM2: Peroxisomal bifunctional enzyme; PBE; PBFE; L-peroxisomal bifunctional enzyme; L-PBE; Multifunctional enzyme 1; MFE1; Multifunctional protein 1; MFP-1; EC 4.2.1.17; EC 5.3.3.8; EC 1.1.1.35 from Mus musculus

43% id,
96% cov

ECHP_RAT / P07896: Peroxisomal bifunctional enzyme; PBE; PBFE; Multifunctional enzyme 1; MFE1; Multifunctional protein 1; MFP1; EC 4.2.1.17; EC 5.3.3.8; EC 1.1.1.35 from Rattus norvegicus
Ehhadh / RF|NP_598290.1: noyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase; EC 1.1.1.35; EC 4.2.1.17; EC 5.3.3.8 from Rattus norvegicus
P07896: enoyl-CoA hydratase (EC 4.2.1.17) from Rattus norvegicus

43% id,
96% cov

ECHP_HUMAN / Q08426: Peroxisomal bifunctional enzyme; PBE; PBFE; L-bifunctional protein; LBP; Multifunctional enzyme 1; MFE1; EC 4.2.1.17; EC 5.3.3.8; EC 1.1.1.35 from Homo sapiens
EHHADH / Q08426: peroxisomal bifunctional enzyme (EC 4.2.1.17; EC 1.1.1.35) from Homo sapiens

42% id,
96% cov

More...

CCNA_01927: enoyl-CoA hydratase
is similar to:
PaperBLAST

paaG / MB|P77467: putative enoyl-CoA hydratase PaaG; EC 4.2.1.17 from Escherichia coli

41% id,
97% cov

PAAF_ECOLI / P76082: 2,3-dehydroadipyl-CoA hydratase; Enoyl-CoA hydratase; EC 4.2.1.17 from Escherichia coli
YdbR / b1393: putative 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli
P76082: enoyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli

33% id,
100% cov

FADB_BACSU / P94549: Probable enoyl-CoA hydratase; EC 4.2.1.17 from Bacillus subtilis

33% id,
99% cov

More...

CCNA_02658: 3-hydroxybutyryl-CoA dehydratase
is similar to:
PaperBLAST

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

38% id,
97% cov

BPHYT_RS17335: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Burkholderia phytofirmans

38% id,
97% cov

paaG / MB|P77467: putative enoyl-CoA hydratase PaaG; EC 4.2.1.17 from Escherichia coli

37% id,
99% cov

More...

CCNA_00996: enoyl-CoA hydratase
is similar to:
PaperBLAST

AFT31_ALTAL / Q96VB3: Enoyl-CoA hydratase AFT3-1; AF-toxin biosynthesis protein 3-1; EC 4.2.1.17 from Alternaria alternata

44% id,
84% cov

AKT31_ALTAL / Q9P4U9: Enoyl-CoA hydratase AKT3-1; AF-toxin biosynthesis protein 3-1; EC 4.2.1.17 from Alternaria alternata

44% id,
84% cov

AKT32_ALTAL / Q9P4U7: Enoyl-CoA hydratase AKT3-2; AK-toxin biosynthesis protein 3-2; EC 4.2.1.17 from Alternaria alternata

43% id,
84% cov

More...

CCNA_00074: multifunctional fatty acid oxidation complex subunit alpha FadJ
is similar to:
PaperBLAST

FADJ_ECOLI / P77399: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 1.1.1.35 from Escherichia coli
FadJ / b2341: 3-hydroxyacyl-CoA dehydrogenase FadJ (EC 1.1.1.35; EC 1.1.1.211; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8) from Escherichia coli
fadJ / RF|NP_416843: fatty acid oxidation complex subunit alpha; EC 1.1.1.35; EC 4.2.1.17; EC 5.1.2.3 from Escherichia coli
fadJ / P77399: 3-hydroxyacyl-CoA dehydrogenase FadJ (EC 1.1.1.35; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8) from Escherichia coli

38% id,
98% cov

FADB_PSEFR / P28793: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8; EC 1.1.1.35 from Pseudomonas fragi

36% id,
98% cov

HP15_1512: Enoyl-CoA hydratase (EC 4.2.1.17) from Marinobacter adhaerens

36% id,
98% cov

More...

CCNA_01891: enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

37% id,
100% cov

DPGD_AMYOR / G4V4T7: Enoyl-CoA-hydratase; EC 4.2.1.17 from Amycolatopsis orientalis

36% id,
98% cov

PAAF_ECOLI / P76082: 2,3-dehydroadipyl-CoA hydratase; Enoyl-CoA hydratase; EC 4.2.1.17 from Escherichia coli
YdbR / b1393: putative 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli
P76082: enoyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli

34% id,
100% cov

More...

CCNA_03180: enoyl-CoA hydratase/isomerase
is similar to:
PaperBLAST

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

37% id,
98% cov

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

36% id,
94% cov

DPGD_AMYOR / G4V4T7: Enoyl-CoA-hydratase; EC 4.2.1.17 from Amycolatopsis orientalis

35% id,
95% cov

More...

CCNA_01794: enoyl-CoA hydratase/isomerase family
is similar to:
PaperBLAST

PAAF_ECOLI / P76082: 2,3-dehydroadipyl-CoA hydratase; Enoyl-CoA hydratase; EC 4.2.1.17 from Escherichia coli
YdbR / b1393: putative 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli
P76082: enoyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli

36% id,
97% cov

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

35% id,
95% cov

BPHYT_RS17335: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Burkholderia phytofirmans

35% id,
95% cov

More...

CCNA_00401: enoyl-CoA hydratase
is similar to:
PaperBLAST

paaG / MB|P77467: putative enoyl-CoA hydratase PaaG; EC 4.2.1.17 from Escherichia coli

33% id,
99% cov

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

32% id,
98% cov

ECH14_MYCBO / P64019: Probable enoyl-CoA hydratase echA14; EC 4.2.1.17 from Mycobacterium bovis

31% id,
96% cov

More...

CCNA_01414: 3-hydroxyisobutyryl-CoA hydrolase
is similar to:
PaperBLAST

Q9SE41: enoyl-CoA hydratase (EC 4.2.1.17) from Avicennia marina

33% id,
95% cov

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

28% id,
96% cov

paaG / MB|P77467: putative enoyl-CoA hydratase PaaG; EC 4.2.1.17 from Escherichia coli

28% id,
97% cov

More...

CCNA_02251: methylglutaconyl-CoA hydratase
is similar to:
PaperBLAST

FER4_USTMA / Q4PEN0: Enoyl-CoA isomerase/hydratase fer4; Fe-regulated protein 4; Ferrichrome A biosynthesis protein fer4; EC 4.2.1.17 from Ustilago maydis

31% id,
97% cov

ECH14_MYCBO / P64019: Probable enoyl-CoA hydratase echA14; EC 4.2.1.17 from Mycobacterium bovis

32% id,
83% cov

ECH17_MYCBO / Q7TXE1: Probable enoyl-CoA hydratase echA17; EC 4.2.1.17 from Mycobacterium bovis

30% id,
85% cov

More...

CCNA_02484: trans-feruloyl-CoA hydratase
is similar to:
PaperBLAST

DPGD_AMYOR / G4V4T7: Enoyl-CoA-hydratase; EC 4.2.1.17 from Amycolatopsis orientalis

30% id,
95% cov

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

30% id,
93% cov

ECH14_MYCBO / P64019: Probable enoyl-CoA hydratase echA14; EC 4.2.1.17 from Mycobacterium bovis

31% id,
55% cov

More...

CCNA_00196: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana
Q94AR8: 2-(omega-methylthio)alkylmalate dehydratase (subunit 2/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) from Arabidopsis thaliana

32% id,
87% cov

CCNA_00358: delta 3,5-delta2,4-dienoyl-CoA isomerase precursor
is similar to:
PaperBLAST

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

29% id,
95% cov

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

26% id,
99% cov

BPHYT_RS17335: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Burkholderia phytofirmans

26% id,
98% cov

More...

CCNA_01890: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

ECH17_MYCBO / Q7TXE1: Probable enoyl-CoA hydratase echA17; EC 4.2.1.17 from Mycobacterium bovis

31% id,
89% cov

FADB_BACSU / P94549: Probable enoyl-CoA hydratase; EC 4.2.1.17 from Bacillus subtilis

28% id,
85% cov

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

26% id,
85% cov

More...

CCNA_02903: bifunctional D-altronate/D-mannonate dehydratase
is similar to:
PaperBLAST

lyxD / Q9I1Q2: L-lyxonate dehydratase (EC 4.2.1.176) from Pseudomonas aeruginosa

27% id,
86% cov

C3HPD_STAND / D7A0Y2: Cis-3-hydroxy-L-proline dehydratase; c3LHyp dehydratase; c3LHypD; EC 4.2.1.171 from Starkeya novella

23% id,
89% cov

C3HPD_LABAI / A0NXQ8: Cis-3-hydroxy-L-proline dehydratase; c3LHyp dehydratase; c3LHypD; EC 4.2.1.171 from Labrenzia aggregata
A0NXQ8: cis-L-3-hydroxyproline dehydratase (EC 4.2.1.171) from Labrenzia aggregata

33% id,
39% cov

CCNA_00566: mannonate dehydratase
is similar to:
PaperBLAST

lyxD / Q9I1Q2: L-lyxonate dehydratase (EC 4.2.1.176) from Pseudomonas aeruginosa

27% id,
86% cov

C3HPD_LABAI / A0NXQ8: Cis-3-hydroxy-L-proline dehydratase; c3LHyp dehydratase; c3LHypD; EC 4.2.1.171 from Labrenzia aggregata
A0NXQ8: cis-L-3-hydroxyproline dehydratase (EC 4.2.1.171) from Labrenzia aggregata

25% id,
89% cov

C3HPD_STAND / D7A0Y2: Cis-3-hydroxy-L-proline dehydratase; c3LHyp dehydratase; c3LHypD; EC 4.2.1.171 from Starkeya novella

25% id,
89% cov

CCNA_00195: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

Q9ZW85: 2-(omega-methylthio)alkylmalate dehydratase (subunit 1/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) from Arabidopsis thaliana

36% id,
62% cov

LEUD2_ARATH / Q9LYT7: 3-isopropylmalate dehydratase small subunit 3; 2-(omega-methylthio)alkylmalate dehydratase small subunit 3; AtLEUD2; Isopropylmalate isomerase 1; Isopropylmalate isomerase small subunit 3; IPMI SSU3; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana
Q9LYT7: 2-(omega-methylthio)alkylmalate dehydratase (subunit 1/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) from Arabidopsis thaliana

36% id,
62% cov

LEUD1_ARATH / Q9ZW84: 3-isopropylmalate dehydratase small subunit 2; 2-(omega-methylthio)alkylmalate dehydratase small subunit 2; AtLEUD1; Isopropylmalate isomerase 2; Isopropylmalate isomerase small subunit 2; IPMI SSU2; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana
IPMI2 / Q9ZW84: isopropylmalate isomerase, small subunit (EC 4.2.1.170) from Arabidopsis thaliana

34% id,
61% cov

CCNA_00752: 3-hydroxybutyryl-CoA dehydrogenase
is similar to:
PaperBLAST

fadB / Q9HZJ2: fatty acid oxidation complex α subunit (EC 1.1.1.35; EC 4.2.1.17) from Pseudomonas aeruginosa

38% id,
40% cov

FADB_PSEFR / P28793: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8; EC 1.1.1.35 from Pseudomonas fragi

38% id,
40% cov

Sama_0032: Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) from Shewanella amazonensis

38% id,
39% cov

More...

CCNA_03781: aconitate hydratase
is similar to:
PaperBLAST

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana
Q94AR8: 2-(omega-methylthio)alkylmalate dehydratase (subunit 2/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) from Arabidopsis thaliana

24% id,
49% cov

LEUD2_ARATH / Q9LYT7: 3-isopropylmalate dehydratase small subunit 3; 2-(omega-methylthio)alkylmalate dehydratase small subunit 3; AtLEUD2; Isopropylmalate isomerase 1; Isopropylmalate isomerase small subunit 3; IPMI SSU3; Methylthioalkylmalate isomerase small subunit; MAM-IS; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana
Q9LYT7: 2-(omega-methylthio)alkylmalate dehydratase (subunit 1/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) from Arabidopsis thaliana

36% id,
23% cov

Q9ZW85: 2-(omega-methylthio)alkylmalate dehydratase (subunit 1/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) from Arabidopsis thaliana

38% id,
21% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 21 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

209098-210681 (frame -1) on NC_011916
is similar to:
PaperBLAST

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana
Q94AR8: 2-(omega-methylthio)alkylmalate dehydratase (subunit 2/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) from Arabidopsis thaliana
Also see hits to annotated proteins above

30% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory