Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 65 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_03781: aconitate hydratase
is similar to:		 PaperBLAST

ACNA_BRADU / P70920: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Bradyrhizobium diazoefficiens

 68% id,
100% cov

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

 66% id,
99% cov

ACNA_ECOLI / P25516: Aconitate hydratase A; ACN; Aconitase; Iron-responsive protein-like; IRP-like; RNA-binding protein; Stationary phase enzyme; EC 4.2.1.3 from Escherichia coli
acnA: aconitate hydratase 1; EC 4.2.1.3 from Escherichia coli
P25516: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

 63% id,
99% cov

More...

CCNA_00196: 3-isopropylmalate dehydratase large subunit
is similar to:		 PaperBLAST

ACOHC_CAEEL / Q23500: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Gex-3-interacting protein 22; EC 4.2.1.3 from Caenorhabditis elegans
Q23500: aconitate hydratase (EC 4.2.1.3) from Caenorhabditis elegans

 27% id,
51% cov

Q9NFX2: aconitate hydratase (EC 4.2.1.3) from Drosophila melanogaster

 27% id,
50% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

 27% id,
50% cov

More...

CCNA_00195: 3-isopropylmalate dehydratase small subunit
is similar to:		 PaperBLAST

ACO1: aconitate hydratase; EC 4.2.1.3 from Candida albicans

 31% id,
17% cov

HP15_3433: Aconitate hydratase (EC 4.2.1.3) from Marinobacter adhaerens

 26% id,
19% cov

ACNA_BACSU / P09339: Aconitate hydratase A; ACN; Aconitase; Aconitate/2-methylaconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.- from Bacillus subtilis
citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis
P09339: aconitate hydratase (EC 4.2.1.3) from Bacillus subtilis

 25% id,
18% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory