Searching in Caulobacter crescentus NA1000 (Caulo)
Found 8 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).
These curated entries have 5 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Caulobacter crescentus NA1000, or try another query
| CCNA_01555: altronate dehydratase is similar to: | PaperBLAST |
PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae | 34% id, 96% cov |
HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae | 32% id, 93% cov |
GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli | 33% id, 86% cov |
| CCNA_00566: mannonate dehydratase is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 29% id, 41% cov |
| CCNA_02903: bifunctional D-altronate/D-mannonate dehydratase is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 29% id, 36% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 582336-583586 (frame -2) on NC_011916 is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 28% id, 44% cov |
Lawrence Berkeley National Laboratory