Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 15 curated entries in PaperBLAST's database that match '4.2.1.9' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_03139: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides

100% id,
100% cov

ILVD_RHIL3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium leguminosarum

80% id,
100% cov

ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli
IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli
ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli

72% id,
100% cov

More...

CCNA_01488: dihydroxyacid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

34% id,
96% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

35% id,
93% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

33% id,
96% cov

More...

CCNA_00862: xylonate dehydratase xylD
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

33% id,
96% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

32% id,
96% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

32% id,
95% cov

More...

CCNA_02134: phosphogluconate dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

32% id,
95% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

30% id,
99% cov

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

31% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory