Searching in Caulobacter crescentus NA1000 (Caulo)
Found 22 curated entries in PaperBLAST's database that match '4.3.1.18'.
These curated entries have 18 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Caulobacter crescentus NA1000, or try another query
| CCNA_02112: D-cysteine desulfhydrase is similar to: | PaperBLAST |
O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii | 41% id, 95% cov |
| CCNA_03203: threo-3-hydroxyaspartate ammonia-lyase is similar to: | PaperBLAST |
SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe | 39% id, 96% cov |
Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum | 37% id, 98% cov |
SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana | 37% id, 95% cov |
| CCNA_03750: threonine dehydratase is similar to: | PaperBLAST |
SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana | 39% id, 93% cov |
SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe | 35% id, 96% cov |
Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum | 34% id, 98% cov |
| CCNA_03740: cysteine synthase is similar to: | PaperBLAST |
SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana | 25% id, 86% cov |
SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus | 25% id, 83% cov |
SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa | 23% id, 82% cov |
| CCNA_01493: cysteine synthase is similar to: | PaperBLAST |
Q9HYN9: D-Serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas aeruginosa | 25% id, 52% cov |
PfGW456L13_3648: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens | 24% id, 52% cov |
AO353_25210: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens | 22% id, 52% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 3363850-3364833 (frame +1) on NC_011916 is similar to: | PaperBLAST |
SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe | 38% id, 99% cov |
Lawrence Berkeley National Laboratory