Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 14 curated entries in PaperBLAST's database that match '6.3.1.11'.

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_03230: glutamine synthetase
is similar to:
PaperBLAST

BPHYT_RS23160: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Burkholderia phytofirmans

60% id,
100% cov

SO1268: Glutamate--putrescine ligase (EC 6.3.1.11) from Shewanella oneidensis

54% id,
99% cov

BWI76_RS10710: Glutamate--putrescine ligase (EC 6.3.1.11) from Klebsiella michiganensis

36% id,
97% cov

More...

CCNA_03240: glutamine synthetase
is similar to:
PaperBLAST

Pf6N2E2_4509: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

44% id,
100% cov

Pf1N1B4_2254: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

44% id,
100% cov

AO356_13135: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

43% id,
99% cov

More...

CCNA_02047: glutamine synthetase
is similar to:
PaperBLAST

AO356_13135: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

28% id,
96% cov

PfGW456L13_925: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

28% id,
96% cov

AO353_08595: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

28% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory