Curated BLAST for Genomes


Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 7 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase large subunit' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_00196: 3-isopropylmalate dehydratase large subunit
is similar to:

leuC / CAD19516.1: 3-isopropylmalate dehydratase large subunit, partial from Rhizobium etli

68% id,
100% cov

leuC / ECOCYC|LEUC-MONOMER: 3-isopropylmalate dehydratase large subunit; EC from Escherichia coli

63% id,
100% cov

LEUC1_SALTY / P15717: 3-isopropylmalate dehydratase large subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC from Salmonella typhimurium

62% id,
100% cov


CCNA_03781: aconitate hydratase
is similar to:

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC; EC from Arabidopsis thaliana

24% id,
49% cov

CCNA_00195: 3-isopropylmalate dehydratase small subunit
is similar to:

GLOJ_GLAL2 / S3E7P8: 3-isopropylmalate dehydratase large subunit gloJ; L-homotyrosine biosynthesis sub-cluster protein gloJ; Pneumocandin biosynthesis cluster protein J; EC from Glarea lozoyensis

34% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory