Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 4 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_02994: carbamoyl-phosphate synthase large chain
is similar to:
PaperBLAST

CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana

57% id,
91% cov

CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis

47% id,
97% cov

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

45% id,
90% cov

More...

CCNA_01961: biotin carboxylase
is similar to:
PaperBLAST

CARB_YEAST / P03965: Carbamoyl-phosphate synthase arginine-specific large chain; Arginine-specific carbamoyl-phosphate synthetase, ammonia chain; EC 6.3.5.5 from Saccharomyces cerevisiae

23% id,
28% cov

CCNA_03320: biotin carboxylase
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

23% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory