Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 1 curated entries in PaperBLAST's database that match 'deoxy%ribose dehydrogenase%beta' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_00021: putative aerobic-type carbon monoxide dehydrogenase, large subunit CoxL
is similar to:
PaperBLAST

C7A11_18885 / A0A1N7UDX6: 2-deoxy-D-ribose dehydrogenase β subunit from Pseudomonas simiae

35% id,
98% cov

CCNA_02352: membrane-bound aldehyde dehydrogenase, large subunit
is similar to:
PaperBLAST

C7A11_18885 / A0A1N7UDX6: 2-deoxy-D-ribose dehydrogenase β subunit from Pseudomonas simiae

35% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory