Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 2 curated entries in PaperBLAST's database that match 'glycine decarboxylase H' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_03464: glycine cleavage system H protein
is similar to:
PaperBLAST

AT2G35120 / O82179: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

47% id,
75% cov

AT2G35370 / P25855: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

46% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3627744-3628295 (frame -2) on NC_011916
is similar to:
PaperBLAST

AT2G35370 / P25855: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

41% id,
94% cov

AT2G35120 / O82179: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

44% id,
84% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory