Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 6 curated entries in PaperBLAST's database that match 'hisF' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_03853: imidazole glycerol phosphate synthase, cyclase subunit
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

64% id,
99% cov

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima

56% id,
100% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

56% id,
99% cov

More...

CCNA_03852: phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

33% id,
90% cov

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima

26% id,
88% cov

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

25% id,
88% cov

CCNA_03085: nitropropane dioxygenase/trans-enoyl-CoA reductase family
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

32% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory