Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 64 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_2076: malate dehydrogenase, NAD-dependent
is similar to:
PaperBLAST

Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii

44% id,
97% cov

Q8I8U5: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria acervulina

40% id,
96% cov

CH_024078: L-lactate dehydrogenase; EC 1.1.1.27 from Babesia bovis
Q7Z0X7: L-lactate dehydrogenase (EC 1.1.1.27) from Babesia bovis

40% id,
95% cov

More...

Echvi_0924: Alcohol dehydrogenase, class IV
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

27% id,
46% cov

Echvi_1168: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

25% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory