Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 3 curated entries in PaperBLAST's database that match '1.1.1.368' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_0507: Threonine dehydrogenase and related Zn-dependent dehydrogenases
is similar to:
PaperBLAST

HAD_THAAR / O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; EC 1.1.1.368 from Thauera aromatica
had / O87871: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase subunit (EC 1.1.1.368) from Thauera aromatica
O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.1.1.368) from Thauera aromatica

26% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

566357-567466 (frame -2) on Echvi_Contig97.1
is similar to:
PaperBLAST

HAD_THAAR / O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; EC 1.1.1.368 from Thauera aromatica
had / O87871: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase subunit (EC 1.1.1.368) from Thauera aromatica
O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.1.1.368) from Thauera aromatica
Also see hits to annotated proteins above

26% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory