Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 33 curated entries in PaperBLAST's database that match '1.1.1.41' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1839: isocitrate dehydrogenase, NADP-dependent, monomeric type
is similar to:		 PaperBLAST

A0A0M4S9Q1: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter curvus

 51% id,
99% cov

J4X756: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter sp.

 51% id,
99% cov

Echvi_4068: isocitrate dehydrogenase
is similar to:		 PaperBLAST

IDH5_ARATH / Q945K7: Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; IDH-V; Isocitric dehydrogenase 5; NAD(+)-specific ICDH 5; EC 1.1.1.41 from Arabidopsis thaliana
Q945K7: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

 44% id,
90% cov

IDH2_YEAST / P28241: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae
P28241: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae

 42% id,
91% cov

IDH6_ARATH / Q8LG77: Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial; IDH-VI; Isocitric dehydrogenase 6; NAD(+)-specific ICDH 6; EC 1.1.1.41 from Arabidopsis thaliana
Q8LG77: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

 43% id,
89% cov

More...

Echvi_2062: 3-isopropylmalate dehydrogenase
is similar to:		 PaperBLAST

IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus
Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus

 32% id,
89% cov

IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens
P50213: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Homo sapiens

 32% id,
89% cov

IDH3A_RAT / Q99NA5: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Rattus norvegicus
Q99NA5: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rattus norvegicus

 32% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4875726-4877213 (frame -1) on Echvi_Contig97.1
is similar to:		 PaperBLAST

IDH5_ARATH / Q945K7: Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; IDH-V; Isocitric dehydrogenase 5; NAD(+)-specific ICDH 5; EC 1.1.1.41 from Arabidopsis thaliana
Q945K7: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana
Also see hits to annotated proteins above

 43% id,
92% cov

IDH6_ARATH / Q8LG77: Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial; IDH-VI; Isocitric dehydrogenase 6; NAD(+)-specific ICDH 6; EC 1.1.1.41 from Arabidopsis thaliana
Q8LG77: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana
Also see hits to annotated proteins above

 42% id,
92% cov

IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus
Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus
Also see hits to annotated proteins above

 40% id,
92% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory