Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 44 curated entries in PaperBLAST's database that match '1.1.1.44' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_4222: 6-phosphogluconate dehydrogenase, decarboxylating
is similar to:
PaperBLAST

6PGD_SHEEP / P00349: 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Ovis aries

60% id,
99% cov

Q9DCD0: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Mus musculus

60% id,
99% cov

6PGD_HUMAN / P52209: 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Homo sapiens
PGD / P52209: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) from Homo sapiens
P52209: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Homo sapiens

59% id,
99% cov

More...

Echvi_2861: 6-phosphogluconate dehydrogenase, decarboxylating
is similar to:
PaperBLAST

P96789: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Lactococcus lactis

52% id,
99% cov

6PGD_BACSU / P80859: 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating; GNTZII; EC 1.1.1.44 from Bacillus subtilis
gndA / P80859: 6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44) from Bacillus subtilis
P80859: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Bacillus subtilis

52% id,
100% cov

6PGD_ECOLI / P00350: 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Escherichia coli
Gnd / b2029: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) from Escherichia coli
gnd / P00350: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) from Escherichia coli
P00350: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Escherichia coli

50% id,
100% cov

More...

Echvi_0478: 6-phosphogluconate dehydrogenase, decarboxylating
is similar to:
PaperBLAST

6PGD_BACSU / P80859: 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating; GNTZII; EC 1.1.1.44 from Bacillus subtilis
gndA / P80859: 6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44) from Bacillus subtilis
P80859: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Bacillus subtilis

39% id,
99% cov

Q762L5: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Klebsiella pneumoniae

39% id,
99% cov

Q9WYR9: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Thermotoga maritima

39% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory