Curated BLAST for Genomes


Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 19 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_3865: FAD/FMN-containing dehydrogenases
is similar to:

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC from Archaeoglobus fulgidus

29% id,
59% cov

Q9YEU4: D-lactate dehydrogenase (EC; D-lactate dehydrogenase (acceptor) (EC from Aeropyrum pernix

26% id,
60% cov

E6N788: (S)-2-hydroxy-acid oxidase (EC; D-lactate dehydrogenase (acceptor) (EC from Candidatus Caldarchaeum

25% id,
63% cov


Echvi_1569: Fe-S oxidoreductase
is similar to:

RR42_RS17315: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC from Cupriavidus basilensis

22% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory