Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 5 curated entries in PaperBLAST's database that match '1.2.1.20'.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_3822: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

sad / P76149: succinate semialdehyde dehydrogenase (NAD(P)+) Sad (EC 1.2.1.24; EC 1.2.1.20) from Escherichia coli

46% id,
97% cov

PfGW456L13_495: Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas fluorescens

35% id,
94% cov

davD / Q9I6M5: glutarate semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas aeruginosa

34% id,
94% cov

More...

Echvi_0481: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Q88RC0: glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas putida

36% id,
97% cov

davD / Q9I6M5: glutarate semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas aeruginosa

34% id,
97% cov

gabD / P25526: succinate-semialdehyde dehydrogenase (NADP+) GabD (EC 1.2.1.79; EC 1.2.1.20) from Escherichia coli

34% id,
97% cov

More...

Echvi_0535: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Q88RC0: glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas putida

31% id,
95% cov

gabD / P25526: succinate-semialdehyde dehydrogenase (NADP+) GabD (EC 1.2.1.79; EC 1.2.1.20) from Escherichia coli

30% id,
95% cov

PfGW456L13_495: Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas fluorescens

29% id,
98% cov

More...

Echvi_1497: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

PfGW456L13_495: Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas fluorescens

30% id,
85% cov

davD / Q9I6M5: glutarate semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas aeruginosa

29% id,
85% cov

Q88RC0: glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas putida

29% id,
85% cov

More...

Echvi_1300: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1
is similar to:
PaperBLAST

gabD / P25526: succinate-semialdehyde dehydrogenase (NADP+) GabD (EC 1.2.1.79; EC 1.2.1.20) from Escherichia coli

27% id,
91% cov

sad / P76149: succinate semialdehyde dehydrogenase (NAD(P)+) Sad (EC 1.2.1.24; EC 1.2.1.20) from Escherichia coli

27% id,
88% cov

PfGW456L13_495: Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas fluorescens

26% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory