Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_0125: Prephenate dehydrogenase
is similar to:
PaperBLAST

O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus

31% id,
88% cov

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

26% id,
82% cov

Q8DUW0: prephenate dehydrogenase (EC 1.3.1.12) from Streptococcus mutans

27% id,
79% cov

More...

Echvi_0772: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

31% id,
83% cov

Echvi_3886: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

30% id,
82% cov

Echvi_0123: Prephenate dehydratase
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

28% id,
41% cov

Echvi_4425: RND family efflux transporter, MFP subunit
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

24% id,
43% cov

Echvi_0598: K+-dependent Na+/Ca+ exchanger related-protein
is similar to:
PaperBLAST

novF / Q9L9G2: prephenate dehydrogenase (EC 1.3.1.12) from Streptomyces niveus

38% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory