Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 11 curated entries in PaperBLAST's database that match '1.4.1.16'.

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_3375: Predicted dehydrogenases and related proteins
is similar to:
PaperBLAST

Q7MW40: diaminopimelate dehydrogenase (EC 1.4.1.16) from Porphyromonas gingivalis

32% id,
34% cov

Echvi_3029: glyceraldehyde-3-phosphate dehydrogenase, type I
is similar to:
PaperBLAST

DAPDH_URETH / G1UII1: Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Ureibacillus thermosphaericus
G1UII1: diaminopimelate dehydrogenase (EC 1.4.1.16) from Ureibacillus thermosphaericus

27% id,
25% cov

Echvi_2946: glyceraldehyde-3-phosphate dehydrogenase, type I
is similar to:
PaperBLAST

DAPDH_CORGL / P04964: Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Corynebacterium glutamicum
ddh / P04964: meso-diaminopimelate D-dehydrogenase subunit (EC 1.4.1.16) from Corynebacterium glutamicum

49% id,
10% cov

Echvi_3157: glyceraldehyde-3-phosphate dehydrogenase, type II
is similar to:
PaperBLAST

Q890V3: diaminopimelate dehydrogenase (EC 1.4.1.16) from Clostridium tetani

55% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory