Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 16 curated entries in PaperBLAST's database that match '1.4.1.16' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_3375: Predicted dehydrogenases and related proteins
is similar to:
PaperBLAST

Q7MW40: diaminopimelate dehydrogenase (EC 1.4.1.16) from Porphyromonas gingivalis

32% id,
34% cov

Echvi_3157: glyceraldehyde-3-phosphate dehydrogenase, type II
is similar to:
PaperBLAST

A0A1M5M5H3: diaminopimelate dehydrogenase (EC 1.4.1.16) from Thermosyntropha lipolytica

25% id,
43% cov

Q890V3: diaminopimelate dehydrogenase (EC 1.4.1.16) from Clostridium tetani

55% id,
9% cov

Echvi_3029: glyceraldehyde-3-phosphate dehydrogenase, type I
is similar to:
PaperBLAST

DAPDH_URETH / G1UII1: Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Ureibacillus thermosphaericus
G1UII1: diaminopimelate dehydrogenase (EC 1.4.1.16) from Ureibacillus thermosphaericus

27% id,
25% cov

Echvi_2946: glyceraldehyde-3-phosphate dehydrogenase, type I
is similar to:
PaperBLAST

DAPDH_CORGL / P04964: Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Corynebacterium glutamicum
ddh / P04964: meso-diaminopimelate D-dehydrogenase subunit (EC 1.4.1.16) from Corynebacterium glutamicum

49% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory