Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 23 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_2828: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

A0A0E3JXD9: D-amino-acid oxidase (EC 1.4.3.3) from uncultured bacterium

29% id,
97% cov

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

28% id,
43% cov

Echvi_3950: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

25% id,
95% cov

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

28% id,
66% cov

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

34% id,
12% cov

Echvi_2065: FAD dependent oxidoreductase.
is similar to:
PaperBLAST

Q1AYM8: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

39% id,
27% cov

O35078: D-amino-acid oxidase (EC 1.4.3.3) from Rattus norvegicus

34% id,
30% cov

OXDA_CAEEL / Q95XG9: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Caenorhabditis elegans

41% id,
20% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory