Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 15 curated entries in PaperBLAST's database that match '2.7.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_0478: 6-phosphogluconate dehydrogenase, decarboxylating
is similar to:
PaperBLAST

BPHYT_RS16720: Gluconokinase (EC 2.7.1.12) from Burkholderia phytofirmans

42% id,
100% cov

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

43% id,
96% cov

RR42_RS06130: Gluconokinase (EC 2.7.1.12) from Cupriavidus basilensis

42% id,
98% cov

More...

Echvi_0140: Shikimate kinase
is similar to:
PaperBLAST

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

46% id,
25% cov

Q8NMT0: gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum

52% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory