Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_2001: homoserine kinase
is similar to:
PaperBLAST

Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis

100% id,
100% cov

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

52% id,
100% cov

N515DRAFT_0576: homoserine kinase (EC 2.7.1.39) from Dyella japonica

44% id,
88% cov

More...

Echvi_0140: Shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

32% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory