Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 6 curated entries in PaperBLAST's database that match '2.8.3.13' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1686: Predicted acyl-CoA transferases/carnitine dehydratase
is similar to:
PaperBLAST

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

34% id,
96% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

31% id,
95% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

30% id,
95% cov

More...

Echvi_1687: Predicted acyl-CoA transferases/carnitine dehydratase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

31% id,
97% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

30% id,
97% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

30% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory