Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 17 curated entries in PaperBLAST's database that match '3.2.1.108' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_0485: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

35% id,
98% cov

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

34% id,
99% cov

Echvi_1698: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

34% id,
98% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

34% id,
98% cov

lacM / Q19R71: beta-galactosidase small subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

30% id,
68% cov

Echvi_2143: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

34% id,
98% cov

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

32% id,
98% cov

Echvi_3772: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

30% id,
82% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

27% id,
74% cov

Echvi_2181: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

26% id,
73% cov

Echvi_1669: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

28% id,
68% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

27% id,
44% cov

Echvi_1682: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

29% id,
58% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

32% id,
40% cov

Echvi_1143: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

30% id,
42% cov

Echvi_3321: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

26% id,
44% cov

Echvi_2718: Beta-galactosidase/beta-glucuronidase
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

26% id,
43% cov

Echvi_4354: Beta galactosidase small chain.
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

30% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory