Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 3 curated entries in PaperBLAST's database that match '3.5.1.47' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_0302: amidohydrolase
is similar to:
PaperBLAST

DAPEL_BACSU / O34916: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Bacillus subtilis
ykuR / O34916: N-acetyl-diaminopimelate deacetylase (EC 3.5.1.47) from Bacillus subtilis

33% id,
98% cov

DAPEL_PRIM1 / D5E0A1: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Priestia megaterium

32% id,
94% cov

Echvi_1427: amidohydrolase
is similar to:
PaperBLAST

DAPEL_BACSU / O34916: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Bacillus subtilis
ykuR / O34916: N-acetyl-diaminopimelate deacetylase (EC 3.5.1.47) from Bacillus subtilis

33% id,
98% cov

DAPEL_PRIM1 / D5E0A1: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Priestia megaterium

31% id,
97% cov

Echvi_1546: amidohydrolase
is similar to:
PaperBLAST

DAPEL_PRIM1 / D5E0A1: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Priestia megaterium

30% id,
99% cov

DAPEL_BACSU / O34916: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Bacillus subtilis
ykuR / O34916: N-acetyl-diaminopimelate deacetylase (EC 3.5.1.47) from Bacillus subtilis

26% id,
96% cov

Echvi_3122: Metal-dependent amidase/aminoacylase/carboxypeptidase
is similar to:
PaperBLAST

DAPEL_BACSU / O34916: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Bacillus subtilis
ykuR / O34916: N-acetyl-diaminopimelate deacetylase (EC 3.5.1.47) from Bacillus subtilis

29% id,
98% cov

DAPEL_PRIM1 / D5E0A1: N-acetyldiaminopimelate deacetylase; EC 3.5.1.47 from Priestia megaterium

28% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory