Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1295: diaminopimelate decarboxylase
is similar to:
PaperBLAST

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

26% id,
82% cov

Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica

26% id,
77% cov

Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum

25% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory