Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 17 curated entries in PaperBLAST's database that match '4.1.2.14' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_3630: Entner-Doudoroff aldolase
is similar to:
PaperBLAST

CA265_RS19860: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Pedobacter sp.

46% id,
100% cov

A0A0B6VQ18: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Flavobacterium sp.

41% id,
99% cov

A4VVI7: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Streptococcus suis

35% id,
88% cov

More...

Echvi_3770: 2-keto-3-deoxy-6-phosphogluconate aldolase
is similar to:
PaperBLAST

ALKH_BACSU / P50846: KHG/KDPG aldolase; EC 4.1.3.16; EC 4.1.2.14 from Bacillus subtilis

40% id,
88% cov

D4GV57: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Haloferax volcanii

35% id,
90% cov

A4VVI7: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Streptococcus suis

35% id,
85% cov

More...

Echvi_4516: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
is similar to:
PaperBLAST

KDGA_PICTO / Q6KZI8: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxy-galactonate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.14; EC 4.1.2.51; EC 4.1.2.-; EC 4.1.2.21 from Picrophilus torridus

30% id,
95% cov

O54288: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14); 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC 4.1.2.55) from Saccharolobus solfataricus

27% id,
97% cov

Echvi_1276: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
is similar to:
PaperBLAST

KDGA_THETE / Q704D1: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; KD(P)G aldolase; EC 4.1.2.14; EC 4.1.2.51 from Thermoproteus tenax
Q704D1: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Thermoproteus tenax

27% id,
99% cov

KDGA_PICTO / Q6KZI8: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxy-galactonate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.14; EC 4.1.2.51; EC 4.1.2.-; EC 4.1.2.21 from Picrophilus torridus

32% id,
78% cov

O54288: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14); 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC 4.1.2.55) from Saccharolobus solfataricus

23% id,
96% cov

Echvi_4343: Dihydrodipicolinate synthase/N-acetylneuraminate lyase
is similar to:
PaperBLAST

KDGA_THETE / Q704D1: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; KD(P)G aldolase; EC 4.1.2.14; EC 4.1.2.51 from Thermoproteus tenax
Q704D1: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Thermoproteus tenax

26% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory