Curated BLAST
Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)
Found 17 curated entries in PaperBLAST's database that match '4.1.3.4' as complete word(s).
These curated entries have 12 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query
Echvi_3855: Isopropylmalate/homocitrate/citramalate synthases
is similar to: | PaperBLAST |
CA265_RS13115: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Pedobacter sp. | 50% id,
98% cov |
HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis | 35% id,
89% cov |
mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii
mvaB / P13703: hydroxymethylglutaryl-CoA lyase monomer (EC 4.1.3.4) from Pseudomonas mevalonii | 33% id,
90% cov |
SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti | 29% id,
95% cov |
LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa
liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa | 31% id,
86% cov |
HMGCL_HUMAN / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Homo sapiens
HMGCL / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial (EC 4.1.3.4) from Homo sapiens
P35914: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Homo sapiens | 30% id,
85% cov |
HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus | 31% id,
83% cov |
HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus
P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus | 31% id,
83% cov |
HMGCL_ARATH / O81027: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Arabidopsis thaliana | 31% id,
59% cov |
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans | 31% id,
46% cov |
More... |
Echvi_2061: Isopropylmalate/homocitrate/citramalate synthases
is similar to: | PaperBLAST |
HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis | 21% id,
93% cov |
HMGCL_HUMAN / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Homo sapiens
HMGCL / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial (EC 4.1.3.4) from Homo sapiens
P35914: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Homo sapiens | 25% id,
52% cov |
HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus | 24% id,
52% cov |
HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus
P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus | 23% id,
52% cov |
HMGC2_HUMAN / Q8TB92: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; HMGCL-like 1; Endoplasmic reticulum 3-hydroxy-3-methylglutaryl-CoA lyase; er-cHL; EC 4.1.3.4 from Homo sapiens | 21% id,
49% cov |
HMGC2_RAT / D4A5C3: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; EC 4.1.3.4 from Rattus norvegicus | 26% id,
26% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
2430326-2431873 (frame +2) on Echvi_Contig97.1
is similar to: | PaperBLAST |
HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis
Also see hits to annotated proteins above | 22% id,
98% cov |
HMGC2_HUMAN / Q8TB92: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; HMGCL-like 1; Endoplasmic reticulum 3-hydroxy-3-methylglutaryl-CoA lyase; er-cHL; EC 4.1.3.4 from Homo sapiens
Also see hits to annotated proteins above | 23% id,
74% cov |
HMGC2_RAT / D4A5C3: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; EC 4.1.3.4 from Rattus norvegicus
Also see hits to annotated proteins above | 22% id,
75% cov |
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory