Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 128 curated entries in PaperBLAST's database that match '4.2.1.10'.

These curated entries have 94 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1810: 3-dehydroquinate dehydratase, type II
is similar to:
PaperBLAST

D4S0D1: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Butyrivibrio crossotus

49% id,
97% cov

G8M0G7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Acetivibrio clariflavus

50% id,
95% cov

A1SZA3: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Psychromonas ingrahamii

51% id,
91% cov

More...

Echvi_4069: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

31% id,
99% cov

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

32% id,
91% cov

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

26% id,
100% cov

Echvi_0343: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

30% id,
99% cov

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

28% id,
95% cov

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

27% id,
96% cov

Echvi_2341: naphthoate synthase (dihydroxynaphthoic acid synthetase)
is similar to:
PaperBLAST

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

29% id,
99% cov

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

29% id,
99% cov

Echvi_0069: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

27% id,
89% cov

Echvi_1425: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
is similar to:
PaperBLAST

INHA_PSEPU / Q8G9F9: Isonitrile hydratase; Cyclohexyl-isocyanide hydratase; EC 4.2.1.103 from Pseudomonas putida
inhA / GI|25901009: cyclohexyl-isocyanide hydratase; EC 4.2.1.103 from Pseudomonas putida
inhA / Q8G9F9: isocyanide hydratase subunit (EC 4.2.1.103) from Pseudomonas putida
Q8G9F9: cyclohexyl-isocyanide hydratase (EC 4.2.1.103) from Pseudomonas putida

27% id,
79% cov

Q4K977: cyclohexyl-isocyanide hydratase (EC 4.2.1.103) from Pseudomonas fluorescens

33% id,
48% cov

Echvi_3537: intracellular protease, PfpI family
is similar to:
PaperBLAST

Q4K977: cyclohexyl-isocyanide hydratase (EC 4.2.1.103) from Pseudomonas fluorescens

23% id,
75% cov

Echvi_2539: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
is similar to:
PaperBLAST

INHA_PSEPU / Q8G9F9: Isonitrile hydratase; Cyclohexyl-isocyanide hydratase; EC 4.2.1.103 from Pseudomonas putida
inhA / GI|25901009: cyclohexyl-isocyanide hydratase; EC 4.2.1.103 from Pseudomonas putida
inhA / Q8G9F9: isocyanide hydratase subunit (EC 4.2.1.103) from Pseudomonas putida
Q8G9F9: cyclohexyl-isocyanide hydratase (EC 4.2.1.103) from Pseudomonas putida

26% id,
64% cov

Q4K977: cyclohexyl-isocyanide hydratase (EC 4.2.1.103) from Pseudomonas fluorescens

31% id,
48% cov

Echvi_3082: Pectin methylesterase
is similar to:
PaperBLAST

HIDM_GLYEC / Q5NUF4: 2-hydroxyisoflavanone dehydratase; Carboxylesterase HIDM; EC 3.1.1.1; EC 4.2.1.105 from Glycyrrhiza echinata
Q5NUF4: 2-hydroxyisoflavanone dehydratase (EC 4.2.1.105) from Glycyrrhiza echinata

28% id,
44% cov

Echvi_4610: 3-oxoacyl-(acyl-carrier-protein) reductase
is similar to:
PaperBLAST

DHB4_MOUSE / P51660: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Mus musculus

37% id,
30% cov

DHB4_HUMAN / P51659: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; Short chain dehydrogenase/reductase family 8C member 1; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Homo sapiens

35% id,
29% cov

DHB4_RAT / P97852: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Rattus norvegicus
Hsd17b4 / P97852: peroxisomal multifunctional enzyme type 2 subunit (EC 4.2.1.107) from Rattus norvegicus

35% id,
30% cov

Echvi_4411: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

DHB4_HUMAN / P51659: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; Short chain dehydrogenase/reductase family 8C member 1; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Homo sapiens

31% id,
35% cov

DHB4_RAT / P97852: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Rattus norvegicus
Hsd17b4 / P97852: peroxisomal multifunctional enzyme type 2 subunit (EC 4.2.1.107) from Rattus norvegicus

30% id,
35% cov

DHB4_MOUSE / P51660: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Mus musculus

29% id,
35% cov

Echvi_4005: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

DHB4_RAT / P97852: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Rattus norvegicus
Hsd17b4 / P97852: peroxisomal multifunctional enzyme type 2 subunit (EC 4.2.1.107) from Rattus norvegicus

33% id,
27% cov

DHB4_MOUSE / P51660: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Mus musculus

33% id,
27% cov

DHB4_HUMAN / P51659: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; Short chain dehydrogenase/reductase family 8C member 1; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Homo sapiens

32% id,
27% cov

Echvi_0122: 5-enolpyruvylshikimate-3-phosphate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

34% id,
27% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

32% id,
23% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

45% id,
4% cov

Echvi_2940: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

DHB4_RAT / P97852: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Rattus norvegicus
Hsd17b4 / P97852: peroxisomal multifunctional enzyme type 2 subunit (EC 4.2.1.107) from Rattus norvegicus

26% id,
32% cov

DHB4_HUMAN / P51659: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; Short chain dehydrogenase/reductase family 8C member 1; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Homo sapiens

31% id,
25% cov

DHB4_MOUSE / P51660: Peroxisomal multifunctional enzyme type 2; MFE-2; 17-beta-hydroxysteroid dehydrogenase 4; 17-beta-HSD 4; D-bifunctional protein; DBP; Multifunctional protein 2; MFP-2; EC 1.1.1.n12; EC 4.2.1.107; EC 4.2.1.119 from Mus musculus

28% id,
25% cov

Echvi_0121: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

35% id,
23% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

34% id,
11% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

31% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory