Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 6 curated entries in PaperBLAST's database that match '4.2.1.140' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_3769: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

55% id,
100% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

31% id,
87% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

30% id,
87% cov

Echvi_2941: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

27% id,
62% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory