Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 13 curated entries in PaperBLAST's database that match '4.2.1.18' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_0343: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

CA265_RS09125: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pedobacter sp.

48% id,
100% cov

SM_b21126: 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Sinorhizobium meliloti

32% id,
96% cov

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

32% id,
96% cov

More...

Echvi_4069: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

38% id,
94% cov

F4JML5: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Arabidopsis thaliana

39% id,
85% cov

Fer4 / Q4PEN0: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Ustilago maydis

34% id,
95% cov

More...

Echvi_0069: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

CA265_RS09125: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pedobacter sp.

31% id,
93% cov

Echvi_2341: naphthoate synthase (dihydroxynaphthoic acid synthetase)
is similar to:
PaperBLAST

CA265_RS09125: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Pedobacter sp.

29% id,
98% cov

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

29% id,
91% cov

Fer4 / Q4PEN0: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Ustilago maydis

23% id,
92% cov

Echvi_1069: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q1D5Y4: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Myxococcus xanthus

25% id,
86% cov

F4JML5: methylglutaconyl-CoA hydratase (EC 4.2.1.18) from Arabidopsis thaliana

23% id,
84% cov

AUHM_MOUSE / Q9JLZ3: Methylglutaconyl-CoA hydratase, mitochondrial; 3-MG-CoA hydratase; AU-specific RNA-binding enoyl-CoA hydratase; AU-binding enoyl-CoA hydratase; muAUH; Itaconyl-CoA hydratase; EC 4.2.1.18; EC 4.2.1.56 from Mus musculus

27% id,
44% cov

More...

Echvi_3855: Isopropylmalate/homocitrate/citramalate synthases
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

31% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory