Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 22 curated entries in PaperBLAST's database that match '4.2.1.22'.

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_2080: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

50% id,
93% cov

Echvi_4660: cystathionine beta-synthase
is similar to:
PaperBLAST

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

45% id,
99% cov

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

39% id,
99% cov

CBS_APIME / Q2V0C9: Cystathionine beta-synthase; EC 4.2.1.22 from Apis mellifera
Q2V0C9: cystathionine beta-synthase (EC 4.2.1.22) from Apis mellifera

40% id,
91% cov

More...

Echvi_1734: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

43% id,
93% cov

Echvi_4510: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

39% id,
94% cov

Echvi_0220: cysteine synthase B
is similar to:
PaperBLAST

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

37% id,
97% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

36% id,
97% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

39% id,
65% cov

More...

Echvi_2283: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

35% id,
94% cov

Echvi_3411: OAH/OAS sulfhydrylase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

35% id,
52% cov

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

31% id,
43% cov

Echvi_4053: Predicted transcriptional regulator, contains C-terminal CBS domains
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

30% id,
62% cov

Echvi_3354: threonine dehydratase
is similar to:
PaperBLAST

CBS_APIME / Q2V0C9: Cystathionine beta-synthase; EC 4.2.1.22 from Apis mellifera
Q2V0C9: cystathionine beta-synthase (EC 4.2.1.22) from Apis mellifera

24% id,
58% cov

Echvi_1246: gliding motility-associated protein GldE
is similar to:
PaperBLAST

Q3TWN3: cystathionine beta-synthase (EC 4.2.1.22) from Mus musculus

30% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory