Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.44' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1849: Sugar phosphate isomerases/epimerases
is similar to:
PaperBLAST

AO353_21340: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Pseudomonas fluorescens

23% id,
90% cov

Echvi_1842: Sugar phosphate isomerases/epimerases
is similar to:
PaperBLAST

BPHYT_RS13920: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Burkholderia phytofirmans

28% id,
50% cov

PGA1_c07270: Myo-inosose-2 dehydratase (EC 4.2.1.44) from Phaeobacter inhibens

33% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2165022-2166029 (frame +3) on Echvi_Contig97.1
is similar to:
PaperBLAST

IOLE_BACSU / P42416: Inosose dehydratase; 2-keto-myo-inositol dehydratase; 2KMI dehydratase; EC 4.2.1.44 from Bacillus subtilis
iolE / P42416: scyllo-inosose dehydratase (EC 4.2.1.44) from Bacillus subtilis

27% id,
54% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory