Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 130 curated entries in PaperBLAST's database that match '4.2.1.9'.

These curated entries have 94 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_4039: aconitate hydratase 1
is similar to:
PaperBLAST

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

58% id,
99% cov

citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis

54% id,
99% cov

ACNA_MYCTU / O53166: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Mycobacterium tuberculosis

54% id,
96% cov

More...

Echvi_2055: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ILV3_YEAST / P39522: Dihydroxy-acid dehydratase, mitochondrial; DAD; EC 4.2.1.9 from Saccharomyces cerevisiae

53% id,
96% cov

ILVC_ASPFU / Q4X099: Dihydroxy-acid dehydratase ilvC, mitochondrial; DHAD ilvC; EC 4.2.1.9 from Neosartorya fumigata

54% id,
94% cov

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

50% id,
100% cov

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Echvi_0850: Pterin-4a-carbinolamine dehydratase
is similar to:
PaperBLAST

PHS_SCHPO / O42658: Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Overlapping meiotic transcript 2; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Schizosaccharomyces pombe
omt2 / RF|NP_594610.1: 4-alpha-hydroxytetrahydrobiopterin dehydratase (predicted); EC 4.2.1.96 from Schizosaccharomyces pombe

47% id,
78% cov

Q2Q449: 4a-hydroxytetrahydrobiopterin dehydratase (EC 4.2.1.96) from Toxoplasma gondii

56% id,
60% cov

PHS_HUMAN / P61457: Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Homo sapiens
PHS_RAT / P61459: Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Rattus norvegicus
PCBD1 / P61457: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) from Homo sapiens

45% id,
72% cov

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Echvi_2531: aconitate hydratase, mitochondrial
is similar to:
PaperBLAST

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

28% id,
90% cov

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

30% id,
72% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnA / Q8ZP52: aconitate hydratase 1 (EC 4.2.1.99) from Salmonella typhimurium

28% id,
68% cov

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Echvi_3632: Altronate dehydratase
is similar to:
PaperBLAST

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

35% id,
72% cov

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

32% id,
73% cov

Echvi_0123: Prephenate dehydratase
is similar to:
PaperBLAST

AROD1_ARATH / Q9SA96: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic; AtADT1; AtPDT1; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Q9SA96: arogenate dehydratase (EC 4.2.1.91) from Arabidopsis thaliana

35% id,
71% cov

AROD2_PETHY / D3U716: Arogenate dehydratase 2; PhADT2; Prephenate dehydratase ADT3; EC 4.2.1.91; EC 4.2.1.51 from Petunia hybrida
D3U716: arogenate dehydratase (EC 4.2.1.91) from Petunia x

34% id,
74% cov

AROD2_ARATH / Q9SSE7: Arogenate dehydratase/prephenate dehydratase 2, chloroplastic; AtADT2; AtPDT2; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Q9SSE7: arogenate dehydratase (EC 4.2.1.91) from Arabidopsis thaliana

33% id,
74% cov

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Echvi_3769: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

30% id,
65% cov

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

25% id,
76% cov

RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp.

27% id,
66% cov

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Echvi_0073: yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
is similar to:
PaperBLAST

D4AAT7: ATP-dependent NAD(P)H-hydrate dehydratase (EC 4.2.1.93) from Rattus norvegicus

29% id,
62% cov

NNRD_MOUSE / Q9CZ42: ATP-dependent (S)-NAD(P)H-hydrate dehydratase; ATP-dependent NAD(P)HX dehydratase; Carbohydrate kinase domain-containing protein; NAD(P)HX dehydratase; EC 4.2.1.93 from Mus musculus
Q9CZ42: ATP-dependent NAD(P)H-hydrate dehydratase (EC 4.2.1.93) from Mus musculus

29% id,
62% cov

Echvi_2941: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

25% id,
60% cov

RHMD_POLSJ / Q12DF1: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp.

27% id,
49% cov

Echvi_2060: 3-isopropylmalate dehydratase, small subunit
is similar to:
PaperBLAST

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnA / Q8ZP52: aconitate hydratase 1 (EC 4.2.1.99) from Salmonella typhimurium

33% id,
11% cov

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

33% id,
10% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

38% id,
8% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory