Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 8 curated entries in PaperBLAST's database that match '4.3.1.9' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_3438: thioredoxin-disulfide reductase
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

50% id,
97% cov

Echvi_4681: Thioredoxin reductase
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

28% id,
87% cov

Echvi_4609: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

44% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory