Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 60 curated entries in PaperBLAST's database that match '5.1.3.2' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1472: UDP-glucose-4-epimerase
is similar to:
PaperBLAST

Echvi_1472: UDP-glucose 4-epimerase (EC 5.1.3.2) from Echinicola vietnamensis

100% id,
100% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

51% id,
97% cov

GALE_BIFL2 / E8MF10: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Bifidobacterium longum
lnpD / GB|BAF73927.1: UDP-glucose 4-epimerase; EC 5.1.3.2 from Bifidobacterium longum

49% id,
97% cov

More...

Echvi_4409: Nucleoside-diphosphate-sugar epimerases
is similar to:
PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

34% id,
98% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

39% id,
76% cov

Echvi_1472: UDP-glucose 4-epimerase (EC 5.1.3.2) from Echinicola vietnamensis

30% id,
99% cov

More...

Echvi_2328: Nucleoside-diphosphate-sugar epimerases
is similar to:
PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

33% id,
100% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

33% id,
98% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

28% id,
99% cov

More...

Echvi_3799: Nucleoside-diphosphate-sugar epimerases
is similar to:
PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

32% id,
98% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

31% id,
100% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

32% id,
98% cov

More...

Echvi_3804: Nucleoside-diphosphate-sugar epimerases
is similar to:
PaperBLAST

A3MUJ4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrobaculum calidifontis

31% id,
96% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

29% id,
98% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

29% id,
98% cov

More...

Echvi_2329: dTDP-glucose 4,6-dehydratase
is similar to:
PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

30% id,
98% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

30% id,
98% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

29% id,
99% cov

More...

Echvi_0060: Predicted nucleoside-diphosphate sugar epimerases
is similar to:
PaperBLAST

V5RBP5: UDP-glucose 4-epimerase (EC 5.1.3.2) from Acinetobacter baumannii

36% id,
78% cov

CAPD_RICPR / Q9ZDJ5: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Rickettsia prowazekii

33% id,
79% cov

Q5D9E1: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schistosoma japonicum

27% id,
37% cov

More...

Echvi_4398: GDP-mannose 4,6-dehydratase
is similar to:
PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

25% id,
97% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

30% id,
52% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

36% id,
32% cov

Echvi_1746: dTDP-4-dehydrorhamnose reductase
is similar to:
PaperBLAST

GALE_STRTR / P21977: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Streptococcus thermophilus
galE / P21977: UDP-glucose-4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus
P21977: UDP-glucose 4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus

26% id,
92% cov

GALE_LACHE / Q7WTB1: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Lactobacillus helveticus

26% id,
76% cov

A0A0H2UQY4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Streptococcus pneumoniae

25% id,
50% cov

Echvi_4397: Nucleoside-diphosphate-sugar epimerases
is similar to:
PaperBLAST

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

22% id,
81% cov

Echvi_0697: Galactose mutarotase and related enzymes
is similar to:
PaperBLAST

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

30% id,
47% cov

Echvi_0502: Galactose mutarotase and related enzymes
is similar to:
PaperBLAST

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

29% id,
47% cov

Q9HDU3: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schizosaccharomyces pombe

31% id,
44% cov

Echvi_1993: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

29% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory