Curated BLAST for Genomes


Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_0503: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
is similar to:

Echvi_0503: L-ribulose-5-phosphate 4-epimerase (EC from Echinicola vietnamensis

100% id,
100% cov

CA265_RS08620: L-ribulose-5-phosphate 4-epimerase (EC from Pedobacter sp.

71% id,
100% cov

Shewana3_2065: L-ribulose-5-phosphate 4-epimerase (EC from Shewanella sp.

60% id,
99% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory