Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 174 curated entries in PaperBLAST's database that match '5.3.1.1'.

These curated entries have 118 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1573: Predicted sugar isomerase
is similar to:
PaperBLAST

Echvi_1573: L-rhamnose isomerase (EC 5.3.1.14) from Echinicola vietnamensis

100% id,
100% cov

Q75WH8: L-rhamnose isomerase (EC 5.3.1.14) from Pseudomonas stutzeri

54% id,
99% cov

SMc02321: L-rhamnose isomerase (EC 5.3.1.14) from Sinorhizobium meliloti

54% id,
93% cov

More...

Echvi_2515: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
is similar to:
PaperBLAST

Echvi_2515: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Echinicola vietnamensis

100% id,
100% cov

BT1379: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Bacteroides thetaiotaomicron

57% id,
99% cov

PP_0292: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas putida

39% id,
98% cov

More...

Echvi_3072: Glucuronate isomerase
is similar to:
PaperBLAST

CA265_RS19870: Glucuronate isomerase (EC 5.3.1.12) from Pedobacter sp.

62% id,
100% cov

UXAC_ECOLI / P0A8G3: Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Escherichia coli
YgjZ / b3092: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli
uxaC / P0A8G3: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli
A0A140N3B4: glucuronate isomerase (EC 5.3.1.12) from Escherichia coli

54% id,
99% cov

UXAC_BACSU / O34808: Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Bacillus subtilis

51% id,
99% cov

More...

Echvi_3102: Glucuronate isomerase
is similar to:
PaperBLAST

CA265_RS19870: Glucuronate isomerase (EC 5.3.1.12) from Pedobacter sp.

58% id,
99% cov

UXAC_ECOLI / P0A8G3: Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Escherichia coli
YgjZ / b3092: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli
uxaC / P0A8G3: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli
A0A140N3B4: glucuronate isomerase (EC 5.3.1.12) from Escherichia coli

52% id,
99% cov

UXAC_BACSU / O34808: Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Bacillus subtilis

51% id,
98% cov

More...

Echvi_4006: 5-keto 4-deoxyuronate isomerase
is similar to:
PaperBLAST

PLH5_FORAG / T2KN98: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; P5_isomerase; Polysaccharide utilization locus H protein P5; PUL H protein P5; EC 5.3.1.17 from Formosa agariphila

58% id,
100% cov

KDUI_ECOLI / Q46938: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; EC 5.3.1.17 from Escherichia coli
YqeE / b2843: 5-dehydro-4-deoxy-D-glucuronate isomerase (EC 5.3.1.17) from Escherichia coli
kduI / Q46938: 5-dehydro-4-deoxy-D-glucuronate isomerase (EC 5.3.1.17; EC 5.3.1.9) from Escherichia coli
Q46938: 5-dehydro-4-deoxy-D-glucuronate isomerase (EC 5.3.1.17) from Escherichia coli

55% id,
99% cov

KDUI_DICD3 / Q05529: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; EC 5.3.1.17 from Dickeya dadantii
kduI / Q05529: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase subunit (EC 5.3.1.17) from Dickeya dadantii

50% id,
99% cov

More...

Echvi_1196: triosephosphate isomerase
is similar to:
PaperBLAST

TPIS_CLOPE / Q8XKU1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Clostridium perfringens

51% id,
100% cov

tpiA / O32757: triosephosphate isomerase subunit (EC 5.3.1.1) from Lactobacillus delbrueckii

50% id,
98% cov

TPIS_CAEEL / Q10657: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Caenorhabditis elegans
Q10657: triose-phosphate isomerase (EC 5.3.1.1) from Caenorhabditis elegans

47% id,
98% cov

More...

Echvi_0870: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
is similar to:
PaperBLAST

BT1379: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Bacteroides thetaiotaomicron

47% id,
100% cov

Echvi_2515: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Echinicola vietnamensis

44% id,
100% cov

P10372: 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica

32% id,
96% cov

More...

Echvi_0165: KpsF/GutQ family protein
is similar to:
PaperBLAST

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

45% id,
100% cov

KDSD_FRATT / Q5NGP7: Arabinose 5-phosphate isomerase KdsD; API; EC 5.3.1.13 from Francisella tularensis

45% id,
96% cov

A0A4Q0VE60: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Clostridium tetani

44% id,
97% cov

More...

Echvi_0337: 3-phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

51% id,
60% cov

Echvi_2516: imidazoleglycerol phosphate synthase, cyclase subunit
is similar to:
PaperBLAST

P10372: 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica

31% id,
94% cov

Pf1N1B4_1624: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens

31% id,
89% cov

AO356_09800: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens

31% id,
89% cov

More...

Echvi_1524: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
is similar to:
PaperBLAST

A0A4Q0VE60: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Clostridium tetani

24% id,
82% cov

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

24% id,
51% cov

Echvi_1210: phosphoglycerol geranylgeranyltransferase
is similar to:
PaperBLAST

SMc02570: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sinorhizobium meliloti

30% id,
36% cov

Psest_0155: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas stutzeri

36% id,
23% cov

PS417_01575: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas simiae

33% id,
24% cov

More...

Echvi_3533: 6-phospho 3-hexuloisomerase
is similar to:
PaperBLAST

KDSD / Q9M1T1: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Arabidopsis thaliana

24% id,
39% cov

Echvi_0758: N-acetylmuramic acid 6-phosphate etherase
is similar to:
PaperBLAST

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

29% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory