Curated BLAST for Genomes


Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 90 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1196: triosephosphate isomerase
is similar to:

TPIS_CLOPE / Q8XKU1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC from Clostridium perfringens

51% id,
100% cov

tpiA / O32757: triosephosphate isomerase subunit (EC from Lactobacillus delbrueckii

50% id,
98% cov

TPIS_CAEEL / Q10657: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC; EC from Caenorhabditis elegans
Q10657: triose-phosphate isomerase (EC from Caenorhabditis elegans

47% id,
98% cov


Echvi_0337: 3-phosphoglycerate kinase
is similar to:

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC; EC from Thermotoga maritima
pgk / P36204: Pgk (EC; EC from Thermotoga maritima
P36204: triose-phosphate isomerase (EC from Thermotoga maritima

51% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory