Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 8 curated entries in PaperBLAST's database that match '5.3.1.25' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1274: L-fucose isomerase and related proteins
is similar to:
PaperBLAST

C0SSE7: L-fucose isomerase (EC 5.3.1.25); D-arabinose isomerase (EC 5.3.1.3) from Aeribacillus pallidus

27% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory